R/auto_score.R
auto_score
auto_score(folder = choose.dir(), ploidy = 2, min_threshold = 5000, x_range = c(200, 350), channels = 1:5, myladder = liz600, marker = "mark", quality = 0.9999, plotting = TRUE)
| folder | string path to a folder with only ABI files |
|---|---|
| ploidy | integer; default 2; not yet implemented in Fragman |
| min_threshold | integer, default: 5000 |
| x_range | integer vector; default: 200:500 |
| channels | integer vector; 1:5 |
| myladder | integer vector: default: LIZ600 values |
| marker | string; a namer for the marker |
| quality | numeric; default: 0.9999. 1 would be highest |
| plotting | logical; whether to create plots or not; default: FALSE |
data.frame of scoring results for each file or individual. Two columns for each marker (diploid).